Agent CLI
Tool Categories
Domain map of Agent CLI tool groups and commands to inspect available tools.
The Agent CLI includes 190+ tools grouped by scientific domain.
| Category | Examples |
|---|---|
| Target | Neosubstrate scoring, degron prediction, co-essentiality networks |
| Chemistry | SAR analysis, fingerprint similarity, scaffold clustering |
| Expression | L1000 signatures, pathway enrichment, TF activity, immune scoring |
| Viability | Dose-response modeling, PRISM screening, therapeutic windows |
| Structure | AlphaFold fetch, docking, binding sites, MD simulation |
| Folding | Fastfold AI Cloud: boltz-2, openfold3, chai1, intellifold, monomer, multimer, simplefold_* |
| Literature | PubMed, OpenAlex, ChEMBL search |
| DNA | ORF finding, codon optimization, primer design |
Inspect your current environment:
fastfold tool list
fastfold skills listRelated pages
- Running prompts and health checks: Usage and quick start
- Skills command guide: Skills commands
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