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Agent CLI

Data and Reports

Pull research datasets, configure data paths, and publish or share reports from Agent CLI.

Use data commands to prepare local datasets, and report commands to publish or share session outputs.

fastfold data list           # catalog: description, size, auto/manual
fastfold data status         # what's downloaded locally
fastfold data pull depmap    # a single dataset
fastfold data pull-all       # every auto-downloadable dataset (depmap is ~580MB)
fastfold config set data.depmap /path/to/depmap/   # point to existing data

fastfold setup also offers an optional dataset step with a multi-select (all auto-downloadable datasets preselected). Non-interactive:

fastfold setup --datasets depmap,msigdb   # specific datasets
fastfold setup --datasets all             # everything auto-downloadable
fastfold setup --skip-datasets            # skip the step
/data list                 # catalog of datasets
/data status               # local download status
/data pull msigdb          # download one dataset
/data pull-all             # download everything auto-downloadable
fastfold report list
fastfold report publish
fastfold report show
/export-share

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