# Vobarilizumab
path: 7xl0.cif
include: 
  - chain: 
      id: A
design:
  - chain:
      id: A
      res_index: 26..33,51..57,97..110

structure_groups:
  - group:
      id: A
      visibility: 2
  - group:
      id: A
      visibility: 0
      res_index: 26..33,51..57,97..110


exclude: 
  - chain:
      id: A
      res_index: 26..28 # take out 3
  - chain:
      id: A
      res_index: 51..53 # take out 3
  - chain:
      id: A
      res_index: 97..102 # take out 6

design_insertions:
  - insertion:
      id: A
      res_index: 26 # The res_index'th residue will be a designed one (starting to count from 1)
      num_residues: 1..5
  - insertion:
      id: A
      res_index: 51 # The res_index'th residue will be a designed one (starting to count from 1)
      num_residues: 1..5
  - insertion:
      id: A
      res_index: 97 # The res_index'th residue will be a designed one (starting to count from 1)
      num_residues: 1..12
  

# reindex the residue index which is used in the positional encoding
reset_res_index:
  - chain:
      id: A